Kent,
I don't have any info on bats in churches, but I have observed where bats have entered under aluminum ridge vents where the nails have worked loose on 2 different homes including my own. They must like the constant flow of fresh air which comes up from the soffet vents and out the ridge vent. And the attic of a house is large enough to hold heat through the night. In both instances the shingles were a medium brown in color.
On your concern with plywood, do you think the glue vapors would dissipate with age?

